News

News

News

News

publication-img
publication-img
publication-img
publication-img

Fatema, Deisha, Joshua, and Victoria’s article “CellNEST reveals cell–cell relay networks using attention mechanisms on spatial transcriptomics” is now published in Nature Methods!

2025 , 06 - 06

Paper: https://www.nature.com/articles/s41592-025-02721-3

Code: https://github.com/schwartzlab-methods/CellNEST

Code: https://github.com/schwartzlab-methods/CellNEST-interactive

Conor, Christie, and Javier’s article “TooManyCellsInteractive: A visualization tool for dynamic exploration of single-cell data” is now published in GigaScience!

2024 , 08 - 28

Try it: https://tmci.schwartzlab.ca

Paper: https://academic.oup.com/gigascience/article/doi/10.1093/gigascience/giae056/7738847

Code: https://github.com/schwartzlab-methods/too-many-cells-interactive

Code for TooManyCells (à la Python): https://github.com/schwartzlab-methods/too-many-cells-python