Publications

Publications

Publications

Publications

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AnnoSpat annotates cell types and quantifies cellular arrangements from spatial proteomics

bioRxiv, 2023

Mongia A, Saunders DC, Wang YJ, Brissova M, Powers AC, Kaestner KH, Vahedi G, Naji A, Schwartz GW^, Faryabi RB^

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Single-cell multi-omics analysis of human pancreatic islets reveals novel cellular states in type 1 diabetes.

Nat Metab, 2022

Fasolino M*, Schwartz GW*, Patil AR, Mongia A, Golson ML, Wang YJ, Morgan A, Liu C, Schug J, Liu J, Wu M, Traum D, Kondo A, May CL, Goldman N, Wang W, Feldman M, Moore JH, Japp AS, Betts MR; HPAP Consortium, Faryabi RB, Naji A, Kaestner KH, Vahedi G.

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TooManyCells identifies and visualizes relationships of single-cell clades.

Nat. Methods, 2020

Schwartz GW, Petrovic J, Fasolino M, Zhou Y, Cai S, Xu L, Pear WS, Vahedi G, and Faryabi RB

AnnoSpat annotates cell types and quantifies cellular arrangements from spatial proteomics

bioRxiv 2023

Mongia A, Saunders DC, Wang YJ, Brissova M, Powers AC, Kaestner KH, Vahedi G, Naji A, Schwartz GW^, Faryabi RB^

Single-cell multi-omics analysis of human pancreatic islets reveals novel cellular states in type 1 diabetes.

Nat Metab 2022

Fasolino M*, Schwartz GW*, Patil AR, Mongia A, Golson ML, Wang YJ, Morgan A, Liu C, Schug J, Liu J, Wu M, Traum D, Kondo A, May CL, Goldman N, Wang W, Feldman M, Moore JH, Japp AS, Betts MR; HPAP Consortium, Faryabi RB, Naji A, Kaestner KH, Vahedi G.

TooManyCells identifies and visualizes relationships of single-cell clades.

Nat. Methods 2020

Schwartz GW, Petrovic J, Fasolino M, Zhou Y, Cai S, Xu L, Pear WS, Vahedi G, and Faryabi RB

Trib1 regulates T cell differentiation during chronic infection by restraining the effector program.

J. Exp. Med. 2020

Rome KS, Stein, SJ, Kurachi M, Petrovic J, Schwartz GW, Mack EA, Uljon S, Wu WW, DeHart AG, McClory SE, Xu L, Gimotty PA, Blacklow SC, Faryabi RB, Wherry EJ, Jordan MS, Pear WS.

Oncogenic Notch Promotes Long-Range Regulatory Interactions within Hyperconnected 3D Cliques.

Mol. Cell. 2019

Petrovic J, Zhou Y, Fasolino M, Goldman N, Schwartz GW, Mumbach MR, Nguyen SC, Rome KS, Sela Y, Zapataro Z, Blacklow SC, Kruhlak MJ, Shi J, Aster JC, Joyce EF, Little SC, Vahedi G, Pear WS, Faryabi RB.

Classes of ITD predict outcomes in AML patients treated with FLT3 inhibitors.

Clin. Cancer Res. 2019

Schwartz GW, Manning BS, Zhou Y, Velu PD, Bigdeli A, Astles R, Lehman AW, Morrissette JJD, Perl AE, Li M, Carroll M, and Faryabi RB.

Differential integration of transcriptome and proteome identifies pan-cancer prognostic biomarkers.

Front. Genet. 2018

Schwartz GW, Petrovic J, Zhou Y, and Faryabi RB.