Schwartz Lab https://validator.w3.org/feed/docs/rss2.html Team News Leo Cui Richard Dong Sabrina Xi Chloe Nichole Calica Viet Hoang Fatema, Deisha, Joshua, and Victoria’s article “CellNEST reveals cell–cell relay networks using attention mechanisms on spatial transcriptomics” is now published in Nature Methods! CellNEST reveals cell–cell relay networks using attention mechanisms on spatial transcriptomics Joshua Li Bruno Saleme Gregory is a co-author on “Enhancer-promoter hubs organize transcriptional networks promoting oncogenesis and drug resistance” in collaboration with the Faryabi lab! Lin, Ho Seok, and Gregory are co-authors on “An inflammatory state defines a high-risk T-lineage acute lymphoblastic leukemia subgroup” in collaboration with the Tikhonova lab! An inflammatory state defines a high-risk T-lineage acute lymphoblastic leukemia subgroup Enhancer-promoter hubs organize transcriptional networks promoting oncogenesis and drug resistance Conor, Christie, and Javier’s article “TooManyCellsInteractive: A visualization tool for dynamic exploration of single-cell data” is now published in GigaScience! TooManyCellsInteractive: A visualization tool for dynamic exploration of single-cell data Attribution Fatema, Josh, and Deisha’s preprint “NEST: Spatially-mapped cell-cell communication patterns using a deep learning-based attention mechanism” is out now on bioRxiv! Tingxiao (Victoria) Gao Deisha Paliwal Publications Fatema Zohora Gregory Schwartz Deisha presents at the MBP Summer Student Poster day and wins best poster. Congrats! Ho Seok Lee Wendy Chen Christie Lau Deisha joins the lab as a Master’s student. Welcome! Deisha receives the Canada Graduate Scholarships – Master’s program! Way to go! In collaboration with the Faryabi lab, our new paper “AnnoSpat annotates cell types and quantifies cellular arrangements from spatial proteomics” is out on Nature Communications! Gregory presents at the Biophysics Seminar Series at the University of Toronto AnnoSpat annotates cell types and quantifies cellular arrangements from spatial proteomics NEST: Spatially-mapped cell-cell communication patterns using a deep learning-based attention mechanism TooManyCells identifies and visualizes relationships of single-cell clades. Fatema, Christie, Lin, and Almas present at the CBMP retreat and Fatema wins best poster presentation! AnnoSpat annotates cell types and quantifies cellular arrangements from spatial proteomics NEST-Interactive NEST Gregory is featured on Meet PM Research! Richard, Almas, and Victoria receive Ontario Graduate Scholarships, congrats! Javier Ruiz-Ramírez Richard (Ph.D. student) and Victoria (Masters student) join the lab. Welcome! Christie is awarded the Data Sciences Institute Doctoral Student Fellowship, way to go! Lin Yang Single-cell multi-omics analysis of human pancreatic islets reveals novel cellular states in type 1 diabetes. Almas Khan TooManyCellsInteractive: a visualization tool for dynamic exploration of single-cell data TooManyCellsInteractive SCHWARTZ LAB