TooManyCellsInteractive

TooManyPeaks

TooManyPeaks is an extensiion of TooManyCells for support with scATAC-seq data.

TooManyCells

Cluster single cells and analyze cell clade relationships with colorful visualizations.

modify-fasta

Modify fasta files in several ways.

inteGREAT

Integrate difference data sources and optionally perform differential integration.

hierarchical-spectral-clustering

Hierarchical spectral clustering of a graph.

heatitup-complete

Find and annotate ITDs with assembly or read pair joining using suffix trees and characterize the exogenous segments within the spacer using heat diffusion. A layer on top of heatitup for additional functionality such as working with BAM files directly.

fasta

A simple, mindless parser for fasta files.

diversity

Calculates the diversity of each position in a fasta file.

differential

Finds out whether an entity comes from different distributions (statuses).